AltExtron - gb147 - transcript data

For each organism under consideration, we used all EST, mRNA and HTC sequences 
that we could extract from GenBank 147.

Full datasets of the extracted sequences and/or the scripts used to extract them 
are available upon request.

Transcript sequences were given identifiers based on their GI numbers, and with the
prefix "est_", "mRNA_" or "htc_".  It is not practicable or necessary to list 
these sequences here, and they may be retrived from GenBank/EMBL/DDBJ using the
GI number as the search key. It is however practicable and useful to list here 
the definitions of the sequences involved in the alignments; that is, the clone
library. An example entry is:

mRNA_5006270 (AB007457.1)  cl="not available"

This corresponds to the mRNA sequence in GenBank 147 with GI number 5006270,
and accession(.ver) AB007457.1. In this case we did not manage to parse a
clone library definition from the GenBank files, and this is thus given as
"not available".



    

        
 Homo sapiens 
        
 ae_gb147_human.tcpts_list.gz   
    
    

        
 Mus musculus 
        
 ae_gb147_mouse.tcpts_list.gz   
    
    

        
 Rattus norvegicus 
        
 ae_gb147_rat.tcpts_list.gz   
    
    

        
 Drosophila melanogaster 
        
 ae_gb147_dros.tcpts_list.gz   
    
    

        
 Caenorhabditis elegans 
        
 ae_gb147_elegan.tcpts_list.gz   
    
    

        
 Arabidopsis thaliana 
        
 ae_gb147_arab.tcpts_list.gz   
    
    

        
 Danio rerio 
        
 ae_gb147_zfish.tcpts_list.gz   
    
    

        
 Gallus gallus 
        
 ae_gb147_chicken.tcpts_list.gz   
    
    

        
 Xenopus laevis 
        
 ae_gb147_frog.tcpts_list.gz   
    
    

        
 Bos taurus 
        
 ae_gb147_cow.tcpts_list.gz   
    
    

        
 Anopheles gambiae 
        
 ae_gb147_mosquito.tcpts_list.gz